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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prodh2Proline dehydrogenase 2. (486 aa)    
Predicted Functional Partners:
ENSCHAP00000000677
Aldehyde dehydrogenase 4 family, member A1.
  
 0.959
aldh18a1
Aldehyde dehydrogenase 18 family member A1.
   
 0.943
ENSCHAP00000010007
Aldehyde dehydrogenase 18 family, member A1.
   
 0.943
ENSCHAP00000012977
Pyrroline-5-carboxylate reductase 1a.
   
 0.910
ENSCHAP00000034046
Pyrroline-5-carboxylate reductase 3.
   
 0.910
oat
Ornithine aminotransferase.
    
 0.888
ENSCHAP00000022172
Aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase).
  
 0.887
ENSCHAP00000014368
Prolyl 4-hydroxylase, alpha polypeptide I b.
   
 
 0.856
ENSCHAP00000015083
Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2.
   
 
 0.856
ENSCHAP00000015347
Si:ch73-68b22.2.
   
 
 0.856
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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