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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001388RUN domain containing 1. (576 aa)    
Predicted Functional Partners:
vps51
VPS51 subunit of GARP complex.
   
  
 0.573
ENSCHAP00000048178
Si:ch211-131k2.3.
      
 0.571
ENSCHAP00000058172
Si:ch211-225b10.4.
      
 0.535
vps53
VPS53 subunit of GARP complex.
      
 0.525
ENSCHAP00000024139
VPS54 subunit of GARP complex.
      
 0.514
ENSCHAP00000055449
TATA element modulatory factor 1.
      
 0.514
ENSCHAP00000007259
Islet cell autoantigen 1-like.
    
 
 0.477
ica1
Islet cell autoantigen 1.
    
 
 0.477
ENSCHAP00000045831
EARP complex and GARP complex interacting protein 1.
      
 0.463
ENSCHAP00000019684
VPS52 subunit of GARP complex.
      
 0.445
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.