STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001392Serine palmitoyltransferase, long chain base subunit 1. (497 aa)    
Predicted Functional Partners:
sptlc2
Serine palmitoyltransferase long chain base subunit 2.
  
0.987
ENSCHAP00000039918
Serine palmitoyltransferase, long chain base subunit 3.
  
0.981
LOC105889662
Serine palmitoyltransferase 2-like.
  
0.981
ormdl2
ORMDL sphingolipid biosynthesis regulator 2.
    
 0.979
ormdl3
ORMDL sphingolipid biosynthesis regulator 3.
    
 0.979
ormdl1
ORMDL sphingolipid biosynthesis regulator 1.
    
 0.979
ism1
Isthmin 1.
   
 0.975
ENSCHAP00000035680
Serine palmitoyltransferase, small subunit B.
    
 0.968
ENSCHAP00000041242
Isthmin 2b.
   
 0.968
ENSCHAP00000036066
Mechanistic target of rapamycin kinase.
    
 0.936
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.