STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001455Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1. (752 aa)    
Predicted Functional Partners:
LOC105891268
Transitional endoplasmic reticulum ATPase-like.
   
 0.979
LOC105901173
Transitional endoplasmic reticulum ATPase.
   
 0.979
SPATA5
Spermatogenesis associated 5.
   
 0.977
ENSCHAP00000032928
NPL4 homolog, ubiquitin recognition factor.
    
 0.905
ENSCHAP00000045877
FA core complex associated protein 100.
    
 0.905
eif6
Eukaryotic translation initiation factor 6.
    
   0.893
ENSCHAP00000011314
Katanin p60 subunit A-like 2.
    
 0.849
LOC105890049
ATPase family AAA domain-containing protein 1-A-like.
    
 0.821
ENSCHAP00000002338
Zgc:153738.
    
 0.781
ENSCHAP00000018534
N-ethylmaleimide-sensitive factor a.
    
 0.781
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.