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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ormdl2ORMDL sphingolipid biosynthesis regulator 2. (153 aa)    
Predicted Functional Partners:
ENSCHAP00000001392
Serine palmitoyltransferase, long chain base subunit 1.
    
 0.979
ENSCHAP00000039918
Serine palmitoyltransferase, long chain base subunit 3.
    
 0.851
ism1
Isthmin 1.
    
 0.851
sptlc2
Serine palmitoyltransferase long chain base subunit 2.
    
 0.851
LOC105889662
Serine palmitoyltransferase 2-like.
    
 0.851
ENSCHAP00000041242
Isthmin 2b.
    
 0.838
ENSCHAP00000035680
Serine palmitoyltransferase, small subunit B.
     
 0.825
sacm1l
SAC1 like phosphatidylinositide phosphatase.
    
 0.782
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.782
ENSCHAP00000016132
Aminolevulinate, delta-, synthase 2.
    
 0.753
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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