tbp protein (Clupea harengus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Experiments

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[Homology]

Score

tbp

TATA-box binding protein. (302 aa)

Predicted Functional Partners:

taf10

0.994

ENSCHAP00000008710

0.994

ENSCHAP00000012123

0.994

ENSCHAP00000014041

0.994

ENSCHAP00000014898

0.994

gtf2b

0.994

LOC105893216

0.994

taf6

0.994

taf13

0.994

taf8

0.993

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000008710	ENSCHAP00000012123	ENSCHAP00000008710	ENSCHAP00000012123	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSCHAP00000008710	ENSCHAP00000014898	ENSCHAP00000008710	ENSCHAP00000014898	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSCHAP00000008710	LOC105893216	ENSCHAP00000008710	ENSCHAP00000038058	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 1-like.	0.999
ENSCHAP00000008710	gtf2b	ENSCHAP00000008710	ENSCHAP00000030432	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIB.	0.987
ENSCHAP00000008710	taf10	ENSCHAP00000008710	ENSCHAP00000003532	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 10.	0.999
ENSCHAP00000008710	taf13	ENSCHAP00000008710	ENSCHAP00000040484	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
ENSCHAP00000008710	taf6	ENSCHAP00000008710	ENSCHAP00000040464	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 6.	0.999
ENSCHAP00000008710	taf8	ENSCHAP00000008710	ENSCHAP00000002852	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 8.	0.999
ENSCHAP00000008710	tbp	ENSCHAP00000008710	ENSCHAP00000001482	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein.	0.994
ENSCHAP00000012123	ENSCHAP00000008710	ENSCHAP00000012123	ENSCHAP00000008710	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSCHAP00000012123	ENSCHAP00000014898	ENSCHAP00000012123	ENSCHAP00000014898	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSCHAP00000012123	LOC105893216	ENSCHAP00000012123	ENSCHAP00000038058	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 1-like.	0.999
ENSCHAP00000012123	gtf2b	ENSCHAP00000012123	ENSCHAP00000030432	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIB.	0.994
ENSCHAP00000012123	taf10	ENSCHAP00000012123	ENSCHAP00000003532	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 10.	0.999
ENSCHAP00000012123	taf13	ENSCHAP00000012123	ENSCHAP00000040484	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
ENSCHAP00000012123	taf6	ENSCHAP00000012123	ENSCHAP00000040464	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 6.	0.999
ENSCHAP00000012123	taf8	ENSCHAP00000012123	ENSCHAP00000002852	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 8.	0.999
ENSCHAP00000012123	tbp	ENSCHAP00000012123	ENSCHAP00000001482	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein.	0.994
ENSCHAP00000014041	LOC105893216	ENSCHAP00000014041	ENSCHAP00000038058	annotation not available	Transcription initiation factor TFIID subunit 1-like.	0.556
ENSCHAP00000014041	gtf2b	ENSCHAP00000014041	ENSCHAP00000030432	annotation not available	General transcription factor IIB.	0.564