STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001493Leishmanolysin-like (metallopeptidase M8 family). (661 aa)    
Predicted Functional Partners:
c9orf72
C9orf72-SMCR8 complex subunit.
    
 0.977
atg13
Autophagy related 13.
    
 0.858
ENSCHAP00000020308
RB1-inducible coiled-coil 1.
    
 0.811
ENSCHAP00000032305
annotation not available
    
 0.810
atg101
Autophagy related 101.
     
 0.810
eif2b3
Eukaryotic translation initiation factor 2B subunit gamma.
   
 
  0.765
cntd2
Cyclin N-terminal domain containing 2.
    
 0.698
ENSCHAP00000010180
Cyclin I family, member 2.
    
 0.698
ENSCHAP00000014460
WD repeat domain 41.
    
 0.698
ENSCHAP00000016929
annotation not available
    
 0.698
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.