Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001506annotation not available (572 aa)    
Predicted Functional Partners:
mcoln1
Mucolipin 1.
  
  
 
0.901
ENSCHAP00000031569
Transient receptor potential cation channel, subfamily M, member 2.
     
 0.582
ENSCHAP00000050133
annotation not available
    
 
 0.564
ENSCHAP00000050986
Peptide deformylase, mitochondrial.
    
   0.518
ENSCHAP00000002735
Mitochondrial ribosomal protein L30.
      
 0.490
ENSCHAP00000003304
A kinase (PRKA) anchor protein 17A.
      
 0.488
ENSCHAP00000037237
Si:ch211-239f4.1.
      
 0.486
ENSCHAP00000047986
Transient receptor potential cation channel, subfamily A, member 1b.
     
 0.461
ENSCHAP00000060816
Transient receptor potential cation channel, subfamily A, member 1a.
     
 0.461
lamp1
Lysosomal associated membrane protein 1.
   
  
 0.425
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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