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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001540Cytochrome P450, family 27, subfamily C, polypeptide 1. (541 aa)    
Predicted Functional Partners:
LOC105891210
Cytochrome P450 26A1.
  
 
0.894
lrat
Lecithin retinol acyltransferase.
    
 0.882
ENSCHAP00000017144
Lecithin retinol acyltransferase b, tandem duplicate 1.
    
 0.881
ENSCHAP00000030317
Retinol saturase (all-trans-retinol 13,14-reductase).
    
 0.880
LOC105904876
Lecithin retinol acyltransferase-like.
    
 0.862
LOC105900613
Retinol dehydrogenase 10-B-like.
   
 
 0.859
LOC105905727
Retinol dehydrogenase 8-like.
   
 
 0.858
dhrs1
Dehydrogenase/reductase 1.
   
 
 0.858
LOC105908006
Retinol dehydrogenase 3-like.
   
 
 0.857
ENSCHAP00000017979
Alcohol dehydrogenase 5.
    
 0.857
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.