Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENSCHAP00000001540Cytochrome P450, family 27, subfamily C, polypeptide 1. (541 aa)    
Predicted Functional Partners:
ENSCHAP00000048638
Retinol dehydrogenase 10a.
   
 
 0.941
LOC105897824
Retinol dehydrogenase 10-B-like.
   
 
 0.941
LOC105909823
Retinol dehydrogenase 10-like.
   
 
 0.941
LOC105900613
Retinol dehydrogenase 10-B-like.
   
 
 0.941
LOC105909542
Retinol dehydrogenase 8-like.
   
 
 0.936
rdh8
Retinol dehydrogenase 8.
   
 
 0.936
LOC105905727
Retinol dehydrogenase 8-like.
   
 
 0.936
ENSCHAP00000048010
Zgc:109982.
   
 
 0.936
LOC105894275
Short-chain dehydrogenase/reductase 3-like.
   
 
 0.933
LOC105896832
Retinol dehydrogenase 11-like.
   
 
 0.933
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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