STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001552Programmed cell death 5. (126 aa)    
Predicted Functional Partners:
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
    0.923
rps11
Ribosomal protein S11.
   
    0.919
ENSCHAP00000007939
Ribosomal protein S28.
  
    0.913
rpl35
Ribosomal protein L35.
   
    0.909
ENSCHAP00000005646
Ribosomal protein L23.
   
  
 0.908
rps3
Ribosomal protein S3.
   
    0.903
rpl34
Ribosomal protein L34.
   
    0.902
ENSCHAP00000059020
Ribosomal protein S4 X-linked.
   
    0.893
rpl23a
Ribosomal protein L23a.
   
    0.885
pfdn1
Prefoldin subunit 1.
   
    0.880
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.