STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001616Zinc finger DHHC-type containing 15b. (360 aa)    
Predicted Functional Partners:
ska1
Spindle and kinetochore associated complex subunit 1.
   
 0.847
ENSCHAP00000041163
annotation not available
   
 
 0.697
ENSCHAP00000046868
NDC80 kinetochore complex component.
   
 
 0.685
nup133
Nucleoporin 133.
    
 0.638
ENSCHAP00000027765
Spindle apparatus coiled-coil protein 1.
   
 
  0.606
CLSPN
Claspin.
   
 
 0.591
timeless
Timeless circadian regulator.
   
 
 0.580
ENSCHAP00000054016
Timeless interacting protein.
   
 
 0.579
ENSCHAP00000005649
Replication protein A3.
   
   0.573
ENSCHAP00000056073
Ring finger and WD repeat domain 3.
    
   0.567
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.