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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105905178WD repeat and FYVE domain-containing protein 2-like. (466 aa)    
Predicted Functional Partners:
cdc16
Cell division cycle 16.
   
 0.851
mad2l1
Mitotic arrest deficient 2 like 1.
   
 0.813
tex10
Testis expressed 10.
   
 0.799
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.799
ENSCHAP00000014898
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.798
taf10
TATA-box binding protein associated factor 10.
    
 0.797
ENSCHAP00000028521
Cleavage and polyadenylation specific factor 1.
   
 0.795
ENSCHAP00000008710
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.793
taf8
TATA-box binding protein associated factor 8.
    
 0.791
LOC105893216
Transcription initiation factor TFIID subunit 1-like.
   
 0.790
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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