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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gbe11,4-alpha-glucan branching enzyme 1. (732 aa)    
Predicted Functional Partners:
ENSCHAP00000010635
annotation not available
  
 
 0.992
gys1
Glycogen synthase 1.
 
 0.991
ENSCHAP00000056602
Glycogen synthase 2.
 
 0.991
ENSCHAP00000014065
Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase b.
  
 
 0.978
LOC105903101
Glycogen phosphorylase, muscle form-like.
  
 0.977
pygb
Glycogen phosphorylase B.
  
 0.977
ENSCHAP00000060448
Phosphorylase, glycogen, muscle A.
  
 0.977
yipf6
Yip1 domain family member 6.
  
 0.959
ENSCHAP00000009689
annotation not available
  
 0.952
ENSCHAP00000054461
Trehalase (brush-border membrane glycoprotein).
  
 
 0.946
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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