gsx2 protein (Clupea harengus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

gsx2

GS homeobox 2. (239 aa)

Predicted Functional Partners:

ENSCHAP00000007318

0.584

foxg1

0.584

ENSCHAP00000043765

0.584

ENSCHAP00000060689

0.584

meis2

0.530

meis1

0.530

DMRTA1

0.510

ascl1

0.504

ENSCHAP00000001228

0.495

TSHZ1

0.489

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMRTA1	gsx2	ENSCHAP00000053655	ENSCHAP00000001662	DMRT like family A1.	GS homeobox 2.	0.510
ENSCHAP00000001228	gsx2	ENSCHAP00000001228	ENSCHAP00000001662	Sec1 family domain containing 2.	GS homeobox 2.	0.495
ENSCHAP00000007318	gsx2	ENSCHAP00000007318	ENSCHAP00000001662	annotation not available	GS homeobox 2.	0.584
ENSCHAP00000043765	gsx2	ENSCHAP00000043765	ENSCHAP00000001662	annotation not available	GS homeobox 2.	0.584
ENSCHAP00000060689	gsx2	ENSCHAP00000060689	ENSCHAP00000001662	annotation not available	GS homeobox 2.	0.584
TSHZ1	gsx2	ENSCHAP00000046167	ENSCHAP00000001662	Teashirt zinc finger homeobox 1.	GS homeobox 2.	0.489
TSHZ1	meis1	ENSCHAP00000046167	ENSCHAP00000039028	Teashirt zinc finger homeobox 1.	Meis homeobox 1.	0.658
TSHZ1	meis2	ENSCHAP00000046167	ENSCHAP00000003998	Teashirt zinc finger homeobox 1.	Meis homeobox 2.	0.658
ascl1	gsx2	ENSCHAP00000007007	ENSCHAP00000001662	Achaete-scute family bHLH transcription factor 1.	GS homeobox 2.	0.504
ascl1	meis1	ENSCHAP00000007007	ENSCHAP00000039028	Achaete-scute family bHLH transcription factor 1.	Meis homeobox 1.	0.416
ascl1	meis2	ENSCHAP00000007007	ENSCHAP00000003998	Achaete-scute family bHLH transcription factor 1.	Meis homeobox 2.	0.416
foxg1	gsx2	ENSCHAP00000027026	ENSCHAP00000001662	Forkhead box G1.	GS homeobox 2.	0.584
gsx2	DMRTA1	ENSCHAP00000001662	ENSCHAP00000053655	GS homeobox 2.	DMRT like family A1.	0.510
gsx2	ENSCHAP00000001228	ENSCHAP00000001662	ENSCHAP00000001228	GS homeobox 2.	Sec1 family domain containing 2.	0.495
gsx2	ENSCHAP00000007318	ENSCHAP00000001662	ENSCHAP00000007318	GS homeobox 2.	annotation not available	0.584
gsx2	ENSCHAP00000043765	ENSCHAP00000001662	ENSCHAP00000043765	GS homeobox 2.	annotation not available	0.584
gsx2	ENSCHAP00000060689	ENSCHAP00000001662	ENSCHAP00000060689	GS homeobox 2.	annotation not available	0.584
gsx2	TSHZ1	ENSCHAP00000001662	ENSCHAP00000046167	GS homeobox 2.	Teashirt zinc finger homeobox 1.	0.489
gsx2	ascl1	ENSCHAP00000001662	ENSCHAP00000007007	GS homeobox 2.	Achaete-scute family bHLH transcription factor 1.	0.504
gsx2	foxg1	ENSCHAP00000001662	ENSCHAP00000027026	GS homeobox 2.	Forkhead box G1.	0.584