STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmrt3Doublesex and mab-3 related transcription factor 3. (467 aa)    
Predicted Functional Partners:
ENSCHAP00000032675
Kaptin (actin binding protein).
    
 0.850
SZT2
SZT2 subunit of KICSTOR complex.
    
 0.850
ENSCHAP00000028620
DEP domain containing 5, GATOR1 subcomplex subunit.
   
 0.826
ENSCHAP00000028370
WD repeat domain 24.
    
 0.823
wdr59
WD repeat domain 59.
    
 0.823
ENSCHAP00000047769
NPR2 like, GATOR1 complex subunit.
    
 0.811
immp1l
Inner mitochondrial membrane peptidase subunit 1.
    
 0.688
itfg2
Integrin alpha FG-GAP repeat containing 2.
    
 0.688
ENSCHAP00000027467
Integrin alpha FG-GAP repeat containing 2.
    
 0.688
ENSCHAP00000046449
X-ray repair complementing defective repair in Chinese hamster cells 4.
    
 0.688
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.