STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001746Splicing factor 3a, subunit 1. (788 aa)    
Predicted Functional Partners:
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
ENSCHAP00000012949
Splicing factor 3b, subunit 4.
   
 0.999
ENSCHAP00000015367
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.999
ENSCHAP00000016388
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.999
sf3a2
Splicing factor 3a subunit 2.
   
 0.999
sf3b3
Splicing factor 3b subunit 3.
   
 0.999
ENSCHAP00000035332
Splicing factor 3a, subunit 3.
   
 0.999
ENSCHAP00000035894
Splicing factor 3b, subunit 2.
   
 0.999
sf3b1
Splicing factor 3b subunit 1.
   
 0.999
mfap1
Microfibril associated protein 1.
   
 0.999
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.