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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001773Limb development membrane protein 1-like. (498 aa)    
Predicted Functional Partners:
ENSCHAP00000061101
Sonic hedgehog signaling molecule b.
 
   
 0.554
ENSCHAP00000047401
Indian hedgehog signaling molecule a.
 
   
 0.547
ENSCHAP00000002688
Indian hedgehog signaling molecule b.
 
   
 0.546
ENSCHAP00000001958
Desert hedgehog signaling molecule.
 
   
 0.526
ENSCHAP00000008499
Low density lipoprotein receptor-related protein 2a.
    
  0.519
ENSCHAP00000016585
Low density lipoprotein receptor-related protein 4.
    
  0.519
ENSCHAP00000037656
Low density lipoprotein receptor-related protein 2b.
    
  0.519
ENSCHAP00000060067
Si:dkey-88l16.3.
    
  0.519
LOC105902928
Very low-density lipoprotein receptor-like.
    
  0.519
wnt8b
Wnt family member 8B.
      
 0.404
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.