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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bod1Biorientation of chromosomes in cell division 1. (155 aa)    
Predicted Functional Partners:
LOC105907910
CXXC-type zinc finger protein 1-like.
    
 0.974
ENSCHAP00000004284
Retinoblastoma binding protein 5.
    
 0.968
ENSCHAP00000034369
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.954
ENSCHAP00000058207
WD repeat domain 5.
   
 0.953
ENSCHAP00000030788
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.938
ENSCHAP00000048221
WD repeat domain 82.
    
 0.936
ska1
Spindle and kinetochore associated complex subunit 1.
     
 0.927
ENSCHAP00000008137
Spindle and kinetochore associated complex subunit 3.
   
 
 0.923
ENSCHAP00000008667
annotation not available
   
  0.922
ENSCHAP00000042546
SET domain containing 1B, histone lysine methyltransferase a.
    
 0.900
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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