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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001835PTPRF interacting protein alpha 4. (1187 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.991
RIMS2-2
Regulating synaptic membrane exocytosis 2.
    
 0.991
ENSCHAP00000060892
Calcium/calmodulin-dependent serine protein kinase a.
    
 0.885
ENSCHAP00000049505
Membrane protein, palmitoylated 1.
    
 0.821
ENSCHAP00000037201
PPFIA binding protein 2a.
   
0.802
ENSCHAP00000041841
PPFIA binding protein 1b.
   
0.802
PPFIBP2
PPFIA binding protein 2.
   
0.802
ENSCHAP00000060802
Protein tyrosine phosphatase receptor type Fa.
    
 0.707
ENSCHAP00000040807
Protein tyrosine phosphatase receptor type Sa.
    
 0.704
ENSCHAP00000004451
G protein-coupled receptor kinase interacting ArfGAP 2b.
    
 
 0.684
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.