Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001883annotation not available (429 aa)    
Predicted Functional Partners:
ENSCHAP00000011963
Apoptotic peptidase activating factor 1.
    
 0.789
ENSCHAP00000062823
Baculoviral IAP repeat containing 6.
   
 0.622
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.582
ENSCHAP00000037787
Centromere protein N.
   
 0.568
LOC105907628
Centromere protein M-like.
   
 0.543
ripk4
Receptor interacting serine/threonine kinase 4.
    
 0.525
ENSCHAP00000002698
HESX homeobox 1.
    
 0.507
ENSCHAP00000044126
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
 0.507
ENSCHAP00000034109
annotation not available
   
 0.499
dffb
DNA fragmentation factor subunit beta.
    
 0.478
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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