Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSCHAP00000001886Small integral membrane protein 13. (200 aa)    
Predicted Functional Partners:
ENSCHAP00000043409
Huntingtin interacting protein K.
   
 
 0.912
ENSCHAP00000029310
N(alpha)-acetyltransferase 15, NatA auxiliary subunit a.
   
 
 0.864
LOC105908469
N-alpha-acetyltransferase 15, NatA auxiliary subunit.
   
 
 0.864
ENSCHAP00000003329
Lysine acetyltransferase 14.
   
 
 0.837
ENSCHAP00000004465
N(alpha)-acetyltransferase 50, NatE catalytic subunit.
   
 
 0.837
naa60
N(alpha)-acetyltransferase 60, NatF catalytic subunit.
   
 
 0.837
rpl35
Ribosomal protein L35.
   
 
 0.814
rpl23a
Ribosomal protein L23a.
   
 
 0.810
rps3
Ribosomal protein S3.
   
   0.806
ENSCHAP00000023537
Ribosomal protein L38.
   
   0.803
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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