STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem141Transmembrane protein 141. (124 aa)    
Predicted Functional Partners:
ENSCHAP00000028184
Transmembrane protein 244.
      
 0.542
ENSCHAP00000024222
Pseudouridine synthase like 1.
      
 0.539
rps12
Ribosomal protein S12.
   
  
 0.527
phpt1
Phosphohistidine phosphatase 1.
   
  
 0.427
ENSCHAP00000057637
annotation not available
   
  
 0.427
ENSCHAP00000016659
Eukaryotic translation initiation factor 3, subunit F.
      
 0.424
ENSCHAP00000030374
Glucosidase, alpha; neutral AB.
      
 0.410
ENSCHAP00000049244
Zgc:171967.
      
 0.410
ENSCHAP00000044823
Ly6 domain containing, pigment cell.
      
 0.407
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.