STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001968Ankyrin repeat and MYND domain containing 2a. (434 aa)    
Predicted Functional Partners:
ENSCHAP00000041905
WAS protein family homolog 1.
    
  0.695
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.669
prmt7
Protein arginine methyltransferase 7.
 
  
  0.665
ENSCHAP00000004032
annotation not available
    
 0.641
mars1
methionyl-tRNA synthetase 1.
   
 0.611
ift80
Intraflagellar transport 80.
    
 0.609
COG5
Component of oligomeric golgi complex 5.
     
 0.594
ENSCHAP00000011314
Katanin p60 subunit A-like 2.
   
 0.577
ENSCHAP00000022879
UBX domain protein 7.
    
 0.577
ENSCHAP00000033353
TNF receptor-associated factor 3 interacting protein 1.
    
 0.571
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.