STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RASGEF1BRasGEF domain family member 1B. (513 aa)    
Predicted Functional Partners:
ENSCHAP00000042348
Rap guanine nucleotide exchange factor (GEF) 2.
    
 
0.588
RAPGEF2
Rap guanine nucleotide exchange factor 2.
    
 
0.588
ENSCHAP00000047954
Si:dkey-253i9.4.
    
 
0.588
ENSCHAP00000012727
Son of sevenless homolog 2 (Drosophila).
   
0.573
ENSCHAP00000034349
Son of sevenless homolog 1 (Drosophila).
   
0.573
RAP2A
Ras-related protein Rap-2a.
     
 0.545
RAP2A-2
Ras-related protein Rap-2a-like.
     
 0.545
ENSCHAP00000004454
annotation not available
    
0.532
ENSCHAP00000040528
annotation not available
    
0.532
ENSCHAP00000056429
Rap guanine nucleotide exchange factor (GEF) 6.
    
0.532
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.