STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smim20Small integral membrane protein 20. (67 aa)    
Predicted Functional Partners:
myl1
Myosin light chain 1.
   
 0.928
ENSCHAP00000040615
Troponin C type 2 (fast).
   
 0.857
LOC105890625
Troponin C, skeletal muscle.
   
 0.857
LOC105896158
Tropomyosin alpha-3 chain.
   
 0.852
tpm4
Tropomyosin 4.
   
 0.852
LOC105905587
Tropomyosin alpha-4 chain-like.
   
 0.852
ENSCHAP00000042650
Tropomyosin 3.
   
 0.852
LOC105913318
Tropomyosin alpha-1 chain.
   
 0.852
ENSCHAP00000033908
Troponin I type 2a (skeletal, fast), tandem duplicate 2.
   
 0.820
ENSCHAP00000037981
annotation not available
   
 0.815
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.