STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002002F-box protein 3. (451 aa)    
Predicted Functional Partners:
SKP1
S-phase kinase-associated protein 1-like.
    
 
 0.897
ENSCHAP00000052411
S-phase kinase-associated protein 1.
    
 
 0.897
CUL1
Cullin 1.
    
 
 0.839
LOC105907046
Cullin-1.
    
 
 0.839
rbx1
Ring-box 1.
    
 
 0.719
ENSCHAP00000016227
Transcription factor B1, mitochondrial.
  
  
 0.697
tfb2m
Transcription factor B2, mitochondrial.
  
  
 0.697
ENSCHAP00000048299
Serum response factor binding protein 1.
  
  
 0.697
dimt1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
  
  
 0.697
ENSCHAP00000027667
Cullin 3a.
    
 
 0.685
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.