STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105910240GTP-binding protein SAR1b-like. (198 aa)    
Predicted Functional Partners:
ENSCHAP00000017151
Prolactin regulatory element binding.
   
 0.985
sec31a
SEC31 homolog A, COPII coat complex component.
   
 0.976
ENSCHAP00000054609
SEC31 homolog B, COPII coat complex component.
   
 0.974
ENSCHAP00000013833
SEC23 homolog B, coat complex II component.
    
 0.957
ENSCHAP00000027101
Sec23 homolog A, coat complex II component.
    
 0.957
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.947
ENSCHAP00000023909
SEC24 homolog B, COPII coat complex component.
   
 0.933
ENSCHAP00000052025
SEC24 homolog A, COPII coat complex component.
   
 0.933
ENSCHAP00000012046
Si:dkey-9k7.3.
    
 0.932
ENSCHAP00000026588
Ankyrin repeat domain 40.
   
 0.911
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.