STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ifrd1Interferon related developmental regulator 1. (430 aa)    
Predicted Functional Partners:
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
  0.994
rps27a
Ribosomal protein S27a.
    
  0.949
ENSCHAP00000030857
annotation not available
    
  0.938
ENSCHAP00000028527
Copper metabolism (Murr1) domain containing 1.
    
 0.896
COMMD10
COMM domain containing 10.
   
 0.891
rpl8
Ribosomal protein L8.
    
 
 0.879
rpl18a
Ribosomal protein L18a.
    
 
 0.871
ENSCHAP00000056705
Coiled-coil domain containing 22.
    
 0.870
rps7
Ribosomal protein S7.
    
 
 0.866
ENSCHAP00000061631
Ribosomal protein L36.
    
 
 0.866
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.