Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002183annotation not available (159 aa)    
Predicted Functional Partners:
btf3
Basic transcription factor 3.
   
 0.983
btf3l4
Basic transcription factor 3 like 4.
   
 0.964
rps24
Ribosomal protein S24.
   
 
 0.942
RPS29
Ribosomal protein S29.
   
   0.938
rps7
Ribosomal protein S7.
   
   0.932
rps13
Ribosomal protein S13.
   
 
 0.929
ENSCHAP00000040378
Ribosomal protein S3A.
   
 
 0.922
RPS20
Ribosomal protein S20.
   
   0.920
ENSCHAP00000027151
annotation not available
   
   0.920
rpl15
Ribosomal protein L15.
  
   0.919
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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