STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002222RAB guanine nucleotide exchange factor (GEF) 1. (503 aa)    
Predicted Functional Partners:
ENSCHAP00000023900
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.999
ENSCHAP00000008819
Golgi-associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.989
ENSCHAP00000014646
Alsin Rho guanine nucleotide exchange factor ALS2 b.
   
 0.989
ENSCHAP00000016034
Alsin Rho guanine nucleotide exchange factor ALS2 a.
   
 0.989
ENSCHAP00000020965
annotation not available
    
 0.989
rab21
RAB21, member RAS oncogene family.
   
 0.984
CHML
Rab proteins geranylgeranyltransferase component A 2-like.
     
 0.983
ENSCHAP00000030857
annotation not available
    
 0.982
rps27a
Ribosomal protein S27a.
    
 0.980
RAB31
RAB31, member RAS oncogene family.
   
 0.974
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.