STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002338Zgc:153738. (707 aa)    
Predicted Functional Partners:
ENSCHAP00000022879
UBX domain protein 7.
   
 0.996
ENSCHAP00000042451
IST1 factor associated with ESCRT-III.
    
 0.880
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.874
ENSCHAP00000017615
YOD1 deubiquitinase.
   
 0.824
ubxn1
UBX domain protein 1.
   
 0.823
ENSCHAP00000015499
Ataxin 3.
    
 0.817
ENSCHAP00000032928
NPL4 homolog, ubiquitin recognition factor.
    
 0.810
ENSCHAP00000045877
FA core complex associated protein 100.
    
 0.810
ENSCHAP00000045730
Zinc finger, AN1-type domain 4.
    
 0.782
ENSCHAP00000001455
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
    
 0.781
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.