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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002346Mediator of cell motility 1. (301 aa)    
Predicted Functional Partners:
rpl32
Ribosomal protein L32.
      0.898
ENSCHAP00000050025
Kynurenine 3-monooxygenase.
 
   
 0.800
ammecr1
AMMECR nuclear protein 1.
  
    0.792
ENSCHAP00000018532
Neuregulin 2b.
   
  0.688
ENSCHAP00000024882
Neuregulin 1.
   
  0.688
ENSCHAP00000060186
Neuregulin 2a.
   
  0.688
ENSCHAP00000019155
Erb-b2 receptor tyrosine kinase 2.
    
 0.685
ENSCHAP00000034698
annotation not available
    
 0.675
ENSCHAP00000036810
Erb-b2 receptor tyrosine kinase 4a.
    
 0.675
ENSCHAP00000037059
Erb-b2 receptor tyrosine kinase 3a.
    
 0.675
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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