STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002396RIC8 guanine nucleotide exchange factor A. (561 aa)    
Predicted Functional Partners:
LOC105889474
Guanine nucleotide-binding protein subunit alpha-11.
    
 
 0.854
ENSCHAP00000052663
annotation not available
    
 
 0.854
ENSCHAP00000053577
Guanine nucleotide binding protein (G protein), alpha 14a.
    
 
 0.854
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
  0.771
ndufb6
NADH:ubiquinone oxidoreductase subunit B6.
   
 
  0.771
ndufs4
NADH:ubiquinone oxidoreductase subunit S4.
   
 
  0.767
ndufs6
NADH:ubiquinone oxidoreductase subunit S6.
   
 
  0.766
GNAT2
Guanine nucleotide-binding protein G(t) subunit alpha-3-like.
    
 
 0.658
LOC105897302
Guanine nucleotide-binding protein G(t) subunit alpha-1-like.
    
 
 0.658
ENSCHAP00000040268
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.
    
 
 0.658
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.