STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002402Zinc finger protein 710a. (778 aa)    
Predicted Functional Partners:
ppil6
Peptidylprolyl isomerase like 6.
    
  0.599
ENSCHAP00000042821
General transcription factor IIIC, polypeptide 3.
    
 0.597
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.596
ENSCHAP00000024596
annotation not available
    
  0.558
ENSCHAP00000040549
Tripartite motif containing 33.
    
  0.558
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.554
gnrh2
Gonadotropin releasing hormone 2.
    
 0.547
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
   
  0.539
ENSCHAP00000049610
annotation not available
    
 0.535
ENSCHAP00000058691
NME/NM23 family member 8.
    
 0.535
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.