STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002421DEAQ box RNA-dependent ATPase 1. (781 aa)    
Predicted Functional Partners:
ENSCHAP00000026317
UTP3 small subunit processome component.
   
 0.992
ENSCHAP00000014119
NOP58 ribonucleoprotein homolog (yeast).
   
 0.989
bms1
BMS1 ribosome biogenesis factor.
   
 0.988
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.986
tfip11
Tuftelin interacting protein 11.
   
 0.986
bysl
Bystin like.
   
 0.986
ENSCHAP00000060873
NOP56 ribonucleoprotein homolog.
   
 0.986
nat10
N-acetyltransferase 10.
  
 0.984
ENSCHAP00000051587
WD repeat domain 36.
   
 0.983
wdr3
WD repeat domain 3.
   
 0.982
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.