Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002459annotation not available (590 aa)    
Predicted Functional Partners:
ENSCHAP00000054960
Actin related protein 8.
    
 0.769
ENSCHAP00000059679
Actin related protein 5.
    
 0.766
ino80c
INO80 complex subunit C.
    
 0.756
ruvbl1
RuvB like AAA ATPase 1.
    
 0.756
polr1e
RNA polymerase I subunit E.
    
 0.736
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.725
ENSCHAP00000013547
Replication protein A1.
    
 0.713
gtf2h1
General transcription factor IIH subunit 1.
    
 0.650
ENSCHAP00000041767
Actin-like 6B.
   
 0.645
actl6a
Actin like 6A.
   
 0.645
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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