Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002486Si:dkey-81j8.6. (1532 aa)    
Predicted Functional Partners:
rpl37a
Ribosomal protein L37a.
    
   0.734
ENSCHAP00000039986
Rho-associated, coiled-coil containing protein kinase 2a.
   
  0.511
rock1
Rho associated coiled-coil containing protein kinase 1.
   
  0.511
LOC105900164
Transforming protein RhoA-like.
    
  0.488
LOC105908082
Transforming protein RhoA.
    
  0.488
LOC105893671
Transforming protein RhoA-like.
    
  0.488
LOC105890655
Transforming protein RhoA-like.
    
  0.488
LOC105904931
Transforming protein RhoA-like.
    
  0.488
RHOB
Rho-related GTP-binding protein RhoB.
    
  0.488
ENSCHAP00000008383
Myosin IXB.
   
 
  0.469
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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