STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002578Si:ch211-251b21.1. (460 aa)    
Predicted Functional Partners:
ENSCHAP00000026254
Sodium channel, voltage-gated, type III, beta.
   
 
  0.760
ENSCHAP00000061965
Glutamate receptor, ionotropic, AMPA 2a.
  
 
0.647
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
  
 
0.645
LOC105891600
Glutamate receptor ionotropic, NMDA 1-like.
   
0.637
ENSCHAP00000056897
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
0.637
SCN4B
Sodium voltage-gated channel beta subunit 4.
     
 0.626
ENSCHAP00000048910
Leucine-rich repeats and guanylate kinase domain containing.
   
  0.624
ENSCHAP00000014161
Sodium channel, voltage-gated, type IV, alpha, a.
     
 0.608
SCN4A
Sodium voltage-gated channel alpha subunit 4.
     
 0.608
ENSCHAP00000028436
annotation not available
  
  
 
0.579
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.