STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmt2btRNA methyltransferase 2 homolog B. (481 aa)    
Predicted Functional Partners:
ENSCHAP00000010185
tRNA methyltransferase 61A.
   
  
 0.868
tbl3
Transducin beta like 3.
   
    0.846
ENSCHAP00000025631
BOP1 ribosomal biogenesis factor.
   
    0.845
ENSCHAP00000027188
Centrosomal protein 152.
   
    0.845
rpf2
Ribosome production factor 2 homolog.
   
  
 0.805
ENSCHAP00000028168
tRNA methyltransferase 61B.
   
  
 0.799
ddx54
DEAD-box helicase 54.
  
    0.790
nat10
N-acetyltransferase 10.
  
    0.780
ENSCHAP00000007949
annotation not available
   
    0.777
mettl1
Methyltransferase like 1.
  
  
 0.775
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.