STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000002682Abraxas 2, BRISC complex subunit. (506 aa)    
Predicted Functional Partners:
babam1
BRISC and BRCA1 A complex member 1.
    
 0.998
ENSCHAP00000024796
BRCA1/BRCA2-containing complex, subunit 3.
    
 0.998
babam2
BRISC and BRCA1 A complex member 2.
    
 0.998
shmt2
Serine hydroxymethyltransferase 2.
    
 0.995
ENSCHAP00000006565
annotation not available
    
 0.920
ppil6
Peptidylprolyl isomerase like 6.
    
  0.599
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.596
usp7
Ubiquitin specific peptidase 7.
    
 
 0.583
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.571
mtg2
Mitochondrial ribosome associated GTPase 2.
    
 
 0.555
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.