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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
txndc9Thioredoxin domain containing 9. (226 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
   
 0.917
ENSCHAP00000033279
Cytochrome b5 reductase 4.
  
 0.813
ENSCHAP00000062423
F-box and WD repeat domain containing 4.
    
   0.798
ENSCHAP00000046893
Mitochondrial ribosomal protein S17.
   
    0.763
prdx5
Peroxiredoxin 5.
   
 0.746
ENSCHAP00000007037
annotation not available
   
 0.720
ENSCHAP00000007635
Methionine sulfoxide reductase A.
   
 0.720
ENSCHAP00000062676
Si:ch1073-358c10.1.
   
 0.720
ENSCHAP00000037430
Microsomal triglyceride transfer protein.
    
  0.670
ENSCHAP00000060131
Cyclin G associated kinase.
   
 0.666
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.