Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC105888483Troponin I, slow skeletal muscle-like. (159 aa)    
Predicted Functional Partners:
LOC105890642
Troponin C, slow skeletal and cardiac muscles-like.
   
 0.938
TNNC1
Troponin C, slow skeletal and cardiac muscles-like.
   
 0.938
LOC105890625
Troponin C, skeletal muscle.
   
 0.919
tnnc1
Troponin C1, slow skeletal and cardiac type.
   
 0.907
ENSCHAP00000039877
Troponin T type 1 (skeletal, slow).
   
 0.893
ENSCHAP00000002275
Troponin T type 2a (cardiac).
   
 0.891
ENSCHAP00000005462
Troponin T type 2b (cardiac).
   
 0.891
ENSCHAP00000001457
Troponin T2d, cardiac.
   
 0.888
TNNT3
Troponin T3, fast skeletal type.
   
 0.888
ENSCHAP00000035434
Troponin T type 3a (skeletal, fast).
   
 0.888
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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