FAM53B protein (Clupea harengus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

FAM53B

Family with sequence similarity 53 member B. (394 aa)

Predicted Functional Partners:

ENSCHAP00000051624

0.537

glo1

0.483

LOC105902244

0.458

LOC105898766

0.458

ENSCHAP00000004955

0.445

cnih2

0.445

ENSCHAP00000018116

0.431

ENSCHAP00000038781

0.412

ENSCHAP00000029803

0.404

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000004955	FAM53B	ENSCHAP00000004955	ENSCHAP00000002802	Cornichon family AMPA receptor auxiliary protein 3.	Family with sequence similarity 53 member B.	0.445
ENSCHAP00000018116	FAM53B	ENSCHAP00000018116	ENSCHAP00000002802	annotation not available	Family with sequence similarity 53 member B.	0.431
ENSCHAP00000029803	FAM53B	ENSCHAP00000029803	ENSCHAP00000002802	Transmembrane protein 129, E3 ubiquitin protein ligase.	Family with sequence similarity 53 member B.	0.404
ENSCHAP00000038781	FAM53B	ENSCHAP00000038781	ENSCHAP00000002802	RUN and FYVE domain containing 1.	Family with sequence similarity 53 member B.	0.412
ENSCHAP00000051624	FAM53B	ENSCHAP00000051624	ENSCHAP00000002802	Cytoplasmic FMR1 interacting protein 2.	Family with sequence similarity 53 member B.	0.537
FAM53B	ENSCHAP00000004955	ENSCHAP00000002802	ENSCHAP00000004955	Family with sequence similarity 53 member B.	Cornichon family AMPA receptor auxiliary protein 3.	0.445
FAM53B	ENSCHAP00000018116	ENSCHAP00000002802	ENSCHAP00000018116	Family with sequence similarity 53 member B.	annotation not available	0.431
FAM53B	ENSCHAP00000029803	ENSCHAP00000002802	ENSCHAP00000029803	Family with sequence similarity 53 member B.	Transmembrane protein 129, E3 ubiquitin protein ligase.	0.404
FAM53B	ENSCHAP00000038781	ENSCHAP00000002802	ENSCHAP00000038781	Family with sequence similarity 53 member B.	RUN and FYVE domain containing 1.	0.412
FAM53B	ENSCHAP00000051624	ENSCHAP00000002802	ENSCHAP00000051624	Family with sequence similarity 53 member B.	Cytoplasmic FMR1 interacting protein 2.	0.537
FAM53B	LOC105898766	ENSCHAP00000002802	ENSCHAP00000020922	Family with sequence similarity 53 member B.	DDB1- and CUL4-associated factor 7-like.	0.458
FAM53B	LOC105902244	ENSCHAP00000002802	ENSCHAP00000019252	Family with sequence similarity 53 member B.	DDB1- and CUL4-associated factor 7.	0.458
FAM53B	cnih2	ENSCHAP00000002802	ENSCHAP00000055057	Family with sequence similarity 53 member B.	Cornichon family AMPA receptor auxiliary protein 2.	0.445
FAM53B	glo1	ENSCHAP00000002802	ENSCHAP00000042515	Family with sequence similarity 53 member B.	Glyoxalase I.	0.483
LOC105898766	FAM53B	ENSCHAP00000020922	ENSCHAP00000002802	DDB1- and CUL4-associated factor 7-like.	Family with sequence similarity 53 member B.	0.458
LOC105902244	FAM53B	ENSCHAP00000019252	ENSCHAP00000002802	DDB1- and CUL4-associated factor 7.	Family with sequence similarity 53 member B.	0.458
cnih2	FAM53B	ENSCHAP00000055057	ENSCHAP00000002802	Cornichon family AMPA receptor auxiliary protein 2.	Family with sequence similarity 53 member B.	0.445
glo1	FAM53B	ENSCHAP00000042515	ENSCHAP00000002802	Glyoxalase I.	Family with sequence similarity 53 member B.	0.483