STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmod3Tropomodulin 3. (366 aa)    
Predicted Functional Partners:
ENSCHAP00000006956
annotation not available
   
 0.857
cops3
COP9 signalosome subunit 3.
    
  0.840
myl1
Myosin light chain 1.
   
 
 0.811
cops5
COP9 signalosome subunit 5.
    
 0.804
atp5f1a
methyl-CpG-binding domain protein 2-like.
    
  0.804
DCAF1
DDB1 and CUL4 associated factor 1.
    
  0.802
ENSCHAP00000008881
Angiomotin.
    
  0.799
COPS7B
COP9 signalosome subunit 7A.
    
  0.799
COPS6
COP9 signalosome subunit 6.
    
  0.779
LOC105899958
COP9 signalosome complex subunit 1.
    
  0.747
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.