STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003003Ring finger protein 215. (229 aa)    
Predicted Functional Partners:
cog2
Component of oligomeric golgi complex 2.
    
  0.929
ENSCHAP00000060695
Component of oligomeric golgi complex 3.
   
 
  0.923
cog6
Component of oligomeric golgi complex 6.
     
 0.919
COG5
Component of oligomeric golgi complex 5.
     
 0.916
ENSCHAP00000043508
R-spondin 2.
    
 0.851
ENSCHAP00000035464
R-spondin 1.
    
 0.820
rps27a
Ribosomal protein S27a.
    
 0.798
ENSCHAP00000030857
annotation not available
    
 0.784
ENSCHAP00000038669
R-spondin 3.
    
 0.745
ENSCHAP00000030291
Ubiquitin B.
    
  0.740
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.