LOC105904230 protein (Clupea harengus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene co-occurrence

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[Homology]

Score

LOC105904230

Transmembrane protein 138. (168 aa)

Predicted Functional Partners:

ENSCHAP00000001049

0.683

ENSCHAP00000010014

0.679

ENSCHAP00000041129

0.667

ENSCHAP00000013565

0.549

ENSCHAP00000017473

0.549

ENSCHAP00000040376

0.549

ENSCHAP00000002829

0.480

LOC105889932

0.478

ENSCHAP00000047254

0.478

ENSCHAP00000049732

0.430

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000001049	ENSCHAP00000002829	ENSCHAP00000001049	ENSCHAP00000002829	annotation not available	Transmembrane protein 67.	0.880
ENSCHAP00000001049	ENSCHAP00000010014	ENSCHAP00000001049	ENSCHAP00000010014	annotation not available	Transmembrane protein 231.	0.722
ENSCHAP00000001049	ENSCHAP00000013565	ENSCHAP00000001049	ENSCHAP00000013565	annotation not available	Transmembrane protein 237a.	0.669
ENSCHAP00000001049	ENSCHAP00000017473	ENSCHAP00000001049	ENSCHAP00000017473	annotation not available	Transmembrane protein 237b.	0.669
ENSCHAP00000001049	ENSCHAP00000040376	ENSCHAP00000001049	ENSCHAP00000040376	annotation not available	annotation not available	0.820
ENSCHAP00000001049	ENSCHAP00000041129	ENSCHAP00000001049	ENSCHAP00000041129	annotation not available	MKS transition zone complex subunit 1.	0.741
ENSCHAP00000001049	ENSCHAP00000047254	ENSCHAP00000001049	ENSCHAP00000047254	annotation not available	Transmembrane protein 17.	0.620
ENSCHAP00000001049	ENSCHAP00000049732	ENSCHAP00000001049	ENSCHAP00000049732	annotation not available	Centrosomal protein 41.	0.546
ENSCHAP00000001049	LOC105889932	ENSCHAP00000001049	ENSCHAP00000002757	annotation not available	Transmembrane protein 17A-like.	0.620
ENSCHAP00000001049	LOC105904230	ENSCHAP00000001049	ENSCHAP00000003076	annotation not available	Transmembrane protein 138.	0.683
ENSCHAP00000002829	ENSCHAP00000001049	ENSCHAP00000002829	ENSCHAP00000001049	Transmembrane protein 67.	annotation not available	0.880
ENSCHAP00000002829	ENSCHAP00000010014	ENSCHAP00000002829	ENSCHAP00000010014	Transmembrane protein 67.	Transmembrane protein 231.	0.804
ENSCHAP00000002829	ENSCHAP00000013565	ENSCHAP00000002829	ENSCHAP00000013565	Transmembrane protein 67.	Transmembrane protein 237a.	0.710
ENSCHAP00000002829	ENSCHAP00000017473	ENSCHAP00000002829	ENSCHAP00000017473	Transmembrane protein 67.	Transmembrane protein 237b.	0.710
ENSCHAP00000002829	ENSCHAP00000040376	ENSCHAP00000002829	ENSCHAP00000040376	Transmembrane protein 67.	annotation not available	0.991
ENSCHAP00000002829	ENSCHAP00000041129	ENSCHAP00000002829	ENSCHAP00000041129	Transmembrane protein 67.	MKS transition zone complex subunit 1.	0.995
ENSCHAP00000002829	ENSCHAP00000047254	ENSCHAP00000002829	ENSCHAP00000047254	Transmembrane protein 67.	Transmembrane protein 17.	0.672
ENSCHAP00000002829	ENSCHAP00000049732	ENSCHAP00000002829	ENSCHAP00000049732	Transmembrane protein 67.	Centrosomal protein 41.	0.667
ENSCHAP00000002829	LOC105889932	ENSCHAP00000002829	ENSCHAP00000002757	Transmembrane protein 67.	Transmembrane protein 17A-like.	0.620
ENSCHAP00000002829	LOC105904230	ENSCHAP00000002829	ENSCHAP00000003076	Transmembrane protein 67.	Transmembrane protein 138.	0.480