STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003078Protein geranylgeranyltransferase type I, beta subunit. (368 aa)    
Predicted Functional Partners:
ENSCHAP00000005686
Farnesyltransferase, CAAX box, alpha.
    
 0.999
gart
annotation not available
      
 0.557
ENSCHAP00000009170
annotation not available
     
 0.537
ENSCHAP00000027344
Ras converting CAAX endopeptidase 1a.
      
 0.523
icmt
Isoprenylcysteine carboxyl methyltransferase.
      
 0.522
rap1b
RAP1B, member of RAS oncogene family.
    
 
 0.518
LOC105901888
Ras-related protein Rap-1A-like.
    
 
 0.518
ammecr1
AMMECR nuclear protein 1.
    
   0.508
hey2
Hes related family bHLH transcription factor with YRPW motif 2.
    
 
 0.460
ENSCHAP00000015485
Hes-related family bHLH transcription factor with YRPW motif 1.
    
 
 0.460
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.