STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003083PITP-less RdgB-like protein. (928 aa)    
Predicted Functional Partners:
ENSCHAP00000045900
annotation not available
 
      0.899
ENSCHAP00000050609
Phosphatidylinositol transfer protein, alpha a.
 
      0.899
ENSCHAP00000052390
annotation not available
 
      0.899
ENSCHAP00000054066
Phosphatidylinositol transfer protein, beta.
 
      0.845
dolk
Dolichol kinase.
    
 0.710
ENSCHAP00000031823
Phospholipase A2, group XV.
    
 0.621
ENSCHAP00000031846
Lecithin-cholesterol acyltransferase.
    
 0.621
PITPNC1
Phosphatidylinositol transfer protein cytoplasmic 1.
 
      0.604
ublcp1
Ubiquitin like domain containing CTD phosphatase 1.
    
 0.561
LOC105911382
CTD nuclear envelope phosphatase 1A-like.
    
 0.559
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.