STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps53VPS53 subunit of GARP complex. (833 aa)    
Predicted Functional Partners:
ENSCHAP00000024139
VPS54 subunit of GARP complex.
   
 0.999
vps51
VPS51 subunit of GARP complex.
    
 0.999
ENSCHAP00000019684
VPS52 subunit of GARP complex.
   
 0.998
ENSCHAP00000036613
VPS50 EARP/GARPII complex subunit.
    
 0.998
ENSCHAP00000045831
EARP complex and GARP complex interacting protein 1.
    
 0.994
ENSCHAP00000053656
annotation not available
   
 0.965
ENSCHAP00000032485
Exocyst complex component 5.
   
 
 0.954
exoc4
Exocyst complex component 4.
     
 0.947
ENSCHAP00000001958
Desert hedgehog signaling molecule.
    
 0.925
ENSCHAP00000002688
Indian hedgehog signaling molecule b.
    
 0.925
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.