STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003131Si:ch211-166g5.4. (500 aa)    
Predicted Functional Partners:
ppil6
Peptidylprolyl isomerase like 6.
    
  0.599
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.596
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.554
ENSCHAP00000049610
annotation not available
    
 0.535
ENSCHAP00000058691
NME/NM23 family member 8.
    
 0.535
ENSCHAP00000042821
General transcription factor IIIC, polypeptide 3.
    
 0.527
ENSCHAP00000033279
Cytochrome b5 reductase 4.
    
  0.518
ENSCHAP00000062146
BRCA1 associated RING domain 1.
    
  0.508
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
  0.506
mrps11
Mitochondrial ribosomal protein S11.
    
  0.505
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.